Annotated Papers by Chris Hayduk
Detailed walkthroughs of research papers, with runnable implementations and interactive figures alongside the original ideas.
Each annotation explains the notation and implementation details and includes interactive figures for selected mechanisms.
1 annotation
John Jumper, Richard Evans, Alexander Pritzel, et al. · Nature · 2021
A detailed annotation of AlphaFold2 covering the Evoformer, Invariant Point Attention, FAPE, and a compact PyTorch reference implementation.
Method
Each annotation keeps the source paper, a readable implementation, and explanatory figures connected throughout the discussion.
Claims, equations, and architecture are explained in the order needed to follow the argument.
Excerpts come from runnable, tested implementations whose variable names follow the paper.
Focused demonstrations make mechanisms such as attention and geometric updates easier to inspect.